List of Data Blocks

Data Block 0

Defines the data format for Collection “Overlay Header”.

Field Types: 16, 100, 101, 102

Possible Data Items and their Regions:

  • OverlaySave
    • eType
    • color
    • where
    • parentIndex
    • start
    • end
    • startArrow
    • endArrow
    • rotationAngle
    • orientation
    • runs
    • alignment
    • bkgColor
    • bTransparentBkg
    • volumeDataPtr
    • lassoPtr
  • OverImgloc
    • x
    • y
  • OverImgbox
    • first
    • last
  • OverlaySaveArray
    • array
    • avail
    • used
    • regressionType
  • OverTextRun
    • string
    • font
    • fontFace
    • fontSize
    • color
    • scriptStyle
    • isBold
    • isItalic
    • isUnderlined
  • OverTextRunArray
    • array
    • avail
    • used
  • OverVolumeData
    • sumTotal
    • sumBorders
    • numPixels
    • numPixelsBorders
    • minPixelValue
    • maxPixelValue
    • stdDeviation
    • concentration
    • type
    • hasUserLabel
    • string
    • overlaySavePtr
  • OverLasso
    • start
    • bounds
    • nsteps
    • swused
    • swavail
    • steps
    • integden
    • pixcnt
    • maxpix
    • minpix

Data Block 1

Actual data for Collection “Overlay Header”. See Data Block 0 for details on possible types of data.

Data Block 2

Defines the data format for Collection “Q1 Description”.

Field Types: 16, 100, 101, 102

Possible Data Items and their Regions:

  • Gel
    • file_ver
    • stripe
    • notes
    • nt_used
    • nt_avail
    • stdname
    • stdunits
    • stdtype
    • blotrows
    • blotcols
    • smplwidth
    • bkgden
    • bkgtype
    • calcflags
    • nbacklog
    • backlog
    • tdisp_md
    • lbkg_md
    • lbkg_disk
    • lbkg_window
    • sensitivity
    • min_peak
    • noise_filter
    • shoulder_sens
    • size_scale
    • normalize
    • use_bandlimit
    • shadow
    • lbkg_flags
    • bandlimit
    • tolerance
    • match_flags
    • qcused
    • qcavail
    • calcurves
    • qtyunits
    • vntr_ambig
    • flank
    • repeat
    • vntr_flags
    • sim_flags
    • sim_tolerance
    • sim_required
    • asl_used
    • asl_avail
    • as_links
    • allele_set_code
    • db_name
    • db_path
    • db_filename
    • db_id
    • mod_time
    • taglist
    • db_gelnum
    • db_unit
    • mobilmap
    • db_update
    • db_type
    • adb_gelnum
    • adb_unit
    • adb_taglist
    • flags
    • bstyle
    • difdsp
    • lanes
    • lnused
    • lnavail
    • nxties
    • nyties
    • nties
    • ties
  • Stripe
    • dens
    • denused
    • denavail
    • bkgbox
    • minimum
    • average
    • maximum
  • Lane
    • name
    • nyties
    • crossings
    • segtrace
    • segused
    • segavail
    • bands
    • bandused
    • bandavail
    • gpk
    • gaussused
    • gaussavail
    • dentrace
    • stdlanenum
    • right_stdlanenum
    • right_frac
    • smplwidth
    • lanenum
    • flags
    • calcflags
    • sumden
    • sumd_bands
    • lbkg_disk
    • lbkg_window
    • lbkg_flags
    • dtparm
    • db_sample
    • db_band_set
    • db_standard
    • dmt_used
    • dmt_avail
    • db_mobil
    • db_bset_flags
    • adb_band_set
    • adb_sample
    • lbkg_md
  • Lane Pointer
    • lane pointer
  • Trace
    • dvused
    • dvavail
    • dvals
    • srcstrace
    • navg
    • min
    • max
    • avg
    • bkdvals
    • gaussdvused
    • gaussdvavail
    • gaussdvals
  • Tdiag
    • diag
    • xaxis
    • yaxis
    • data
    • srctrace
    • dsttrace
    • lanenum
    • datawidth
    • firstden
    • max
  • Band
    • name
    • sumden
    • rf
    • stdval
    • quality
    • norm_den
    • calnum
    • qty
    • this
    • first
    • peak
    • last
    • maxpix
    • minpix
    • lasso
    • db_btp_code
    • db_btp_flags
    • adb_btp_code
    • adb_btp_flags
    • stdsource
    • flags
    • qtysource
  • Band Pointer
    • band pointer
  • Lasso
    • start
    • bounds
    • nsteps
    • swused
    • swavail
    • steps
    • integden
    • pixcnt
    • maxpix
    • minpix
  • Band Link
    • lanenum
    • Bandnum
  • Imgloc
    • x
    • y
  • Imgbox
    • first
    • last
  • Band Pointer
    • unowned band pointer
  • Calcurve
    • name
    • desc
    • from
    • cbused
    • cbavail
    • calbands
    • ninterp
    • intps
    • slope
    • intercept
    • corr_coef
    • calnum
    • mcode
    • model
    • extrapolate
    • status
    • type
    • named
  • Calcurve Pointer
    • calcurve pointer
  • Calband
    • band
    • measure
    • qty
    • reldev
    • dilution
    • dilution_txt
    • qtysource
    • relstat
  • Calintp
    • measure
    • qty
  • Crosstie
    • left
    • ax
  • Crdloc
    • x
    • y
  • Stretcloc
    • a
    • r
  • MobilTie
    • rf
    • mobility
    • bst_idx
    • btp_code
  • AlleleSetLink
    • name
    • id_safety
    • allele_set
    • als_item
  • UserDetect
    • sensitivity
    • min_peak
    • noise_filter
    • shoulder_sens
    • size_scale
    • normalize
    • use_bandlimit
    • shadow
    • bandlimit
  • BackLog
    • type
    • minden
    • maxden
  • Note
    • head
    • tail
    • text_start
    • text
    • flags
  • tag
    • pr_code
    • vl_code
  • taglist
    • used
    • avail
    • tags
  • StandardTie
    • std
    • mobility
  • MobilMap
    • lanenum
    • used
    • stdties
  • DifDsp Layout
    • mode
    • ratio
    • differ
  • GaussPeak
    • center
    • sigma
    • height
    • gauerr
    • lolim
    • hilim
  • GaussPeak Pointer
    • gspk pointer

Data Block 3

Actual data for Collection “Q1 Description”. See Data Block 2 for details on possible types of data.

Data Block 4

Defines the data format for Collection “DDB Description”.

Field Types: 16, 100, 101, 102

Possible Data Items and their Regions:

  • tag
    • pr_code
    • vl_code
  • taglist
    • used
    • avail
    • tags
  • tag_value
    • references
    • decode
  • tagdef
    • prompt
    • references
    • used
    • avail
    • values
  • tagdef_list
    • used
    • avail
    • tagdefs
  • band
    • quality
    • std_value
    • norm_den
    • btp_code
    • flags
    • peak
  • lane
    • bands_used
    • bands_avail
    • bands
    • sample_code
    • bst_code
    • flags
    • dentrace
    • dmt_used
    • dmt_avail
    • db_mobil
  • gel
    • path
    • filename
    • id
    • name
    • description
    • cre_time
    • mod_time
    • update
    • lanes_used
    • lanes_avail
    • lanes
    • taglist
    • mobilmap
    • lanewidth
    • detection
    • unit
    • gidx
    • stdtype
    • lbkg_md
    • lbkg_disk
    • lbkg_status
    • layout
  • gel pointer
    • gel pointer
  • sample
    • name
    • cre_time
    • description
    • taglist
    • idx_used
    • idx_avail
    • indices
    • flags
  • sample pointer
    • sample pointer
  • band_type
    • name
    • btp_code
    • index
    • gidx
    • lanenum
    • low_std
    • ideal_std
    • high_std
    • low_sf
    • ideal_sf
    • high_sf
  • band set
    • name
    • cre_time
    • mod_time
    • idx_used
    • idx_avail
    • index
    • comment
    • id
    • tolerance
    • bst_idx
    • bt_used
    • bt_avail
    • bt_valid
    • band_types
    • taglist
    • tagdefs
    • unit
    • norm_btp_code
    • gidx
    • lanenum
    • method
    • modified
    • code_style
    • display_names
    • report_names
    • type
    • unit_change
    • model_vers
  • band set pointer
    • band set pointer
  • base
    • name
    • description
    • cre_time
    • mod_time
    • id
    • pathname
    • gels_used
    • gels_avail
    • gels
    • gel_sorting
    • gel_sort_tag
    • gel_count
    • gtpl_used
    • gtpl_avail
    • gtpl_count
    • gel_templates
    • smpl_used
    • smpl_avail
    • samples
    • sample_sorting
    • sample_count
    • bst_used
    • bst_avail
    • band_sets
    • bst_sorting
    • bst_count
    • srch_used
    • srch_avail
    • srch_count
    • searches
    • tagdef_list
    • layouts
    • units_used
    • units_avail
    • units
    • pop_used
    • pop_avail
    • pop_count
    • pop_links
    • seg_map
    • db_type
  • layouts
    • sum
    • gel_list
    • sample_detail
    • sample_list
    • gel_detail
    • bset
    • srch
    • odrep
    • dbp
    • difdsp
    • detect
  • gel_list_layout
    • sel_name
    • sel_date_from
    • sel_date_to
    • sel_tag1
    • sel_tag2
    • sort_by
    • lst_pr_code
    • dbpos
  • sample_detail_layout
    • tagdefs
    • dbpos
  • sample_list_layout
    • sel_tagdef1
    • sel_tagdef2
    • lst_tagdef1
    • lst_tagdef2
    • sort_by
    • dbpos
  • geldet_layout
    • gel_tagdef1
    • gel_tagdef2
    • sample_tagdef1
    • sample_tagdef2
    • sort_by
    • flags
    • dbpos
  • bset_layout
    • unit
    • tagdefs
    • default_bset
    • lg_dbpos
    • sm_dbpos
  • unit
    • longname
    • shortname
    • unitname
    • interp
    • order
    • flags
  • unit pointer
    • unit pointer
  • reference lane
    • gidx
    • lanenum
    • bst_idx
  • search
    • name
    • smplname
    • date_from
    • date_to
    • taglist
    • tagdefs
    • match
    • ref_smpl
    • match_percent
    • nlanes
    • ref_lanes
    • srchnum
    • search_by
    • compare
    • sim_method
    • weighting
    • edited
    • include
    • useGaussModelsIfPresent
  • search pointer
    • search pointer
  • search layout
    • match_percent
    • srchnum
    • tagdefs
    • sim_method
    • include
    • weighting
    • dbpos
  • lane index
    • gidx
    • lanenum
    • bst_idx
  • pop link
    • name
    • plidx
    • dir_block
    • data_block
  • pop link pointer
    • poplink pointer
  • segment map
    • first
    • nsegs
    • segs
  • dbp_pr_coldata_fields
    • type
    • value
  • pr layout
    • ref_lnum
    • cols_used
    • coldata
    • flags
    • font
  • sum layout
    • style
    • lg_dbpos
    • sm_dbpos
  • imgloc
    • x
    • y
  • imgres
    • x
    • y
  • ddb position
    • loc
    • size
    • flags
  • dbp ptree layout
    • dp_pos
    • method
  • dbp pca layout
    • dp_pos
  • dbp popfrm layout
    • dp_pos
  • dbp layouts
    • popfrm
    • pr
    • ptree
    • pca
    • irp
  • irp layout
    • cols_used
    • coldata
    • ref
    • order
    • active
    • style
    • pg_layout
    • show_btypes
    • ruler
    • ref_lnum
  • odrep layout
    • od_types
  • mobilmap
    • lanenum
    • used
    • stdties
  • standardtie
    • std
    • mobility
  • DifDsp Layout
    • mode
    • ratio
    • differ
  • detect layout
    • userdet
    • screenloc
    • lane_width
    • manual
    • style
    • valid
  • userdetect
    • sensitivity
    • min_peak
    • noise_filter
    • shoulder_sens
    • size_scale
    • normalize
    • use_bandlimit
    • shadow
    • bandlimit
  • dentrace
    • dvused
    • dvavail
    • dvals
    • srctrace
    • navg
    • min
    • max
    • avg
    • bkdvals
    • gaussdvused
    • gaussdvavail
    • gaussdvals
    • gaussmax
    • gaussmin
  • imgbox
    • first
    • last
  • db_mobil.
    • rf
    • mobility
    • bst_idx
    • btp_code

Data Block 5

Actual data for Collection “DDB Description”. See Data Block 4 for details on possible types of data.

Data Block 6

Defines the data format for Collection “Audit Trail”.

Field Types: 16, 100, 101, 102

Possible Data Items and their Regions:

  • AuditTrail
    • m_entries
    • m_userPool
    • m_descPool
    • m_appPool
  • AuditTrailEntry
    • m_time
    • m_user
    • m_description
    • m_details
    • m_detailX1
    • m_detailY1
    • m_detailX2
    • m_detailY2
    • m_version
    • m_comment
    • m_filter
    • m_locked
  • AuditTrailEntryPtr
    • AuditTrailEntryPtr
  • AuditTrailEntryPtrVector
    • m_mmvectorList
    • m_mmvectorUsed
    • m_mmvectorAvail
  • AuditTrailStringPool
    • m_pool
  • AuditTrailStringVector
    • m_mmvectorList
    • m_mmvectorUsed
    • m_mmvectorAvail
  • Imgloc
    • x
    • y
  • Imgres
    • x
    • y
  • Imgbox
    • first
    • last
  • Crdloc
    • x
    • y
  • Crdres
    • x
    • y
  • Crdbox
    • first
    • last
  • Crdscale
    • x
    • y
  • ImgState
    • mincon
    • maxcon
    • in
    • out
    • low_frac
    • high_frac
    • state
    • gamma
    • aspect
  • Savemap
    • center
    • scale
  • CRealPoint
    • m_x
    • m_y
  • CRealSize
    • m_width
    • m_height
  • CRealDistance
    • m_x
    • m_y
  • CRealLine
    • m_start
    • m_end
  • CRealRect
    • m_top
    • m_left
    • m_right
    • m_bottom
  • CImagePoint
    • m_x
    • m_y
  • CImageSize
    • m_width
    • m_height
  • CImageDistance
    • m_x
    • m_y
  • CImageLine
    • m_start
    • m_end
  • CImageRect
    • m_top
    • m_left
    • m_right
    • m_bottom
  • CWindowPoint
    • m_x
    • m_y
  • CWindowSize
    • m_width
    • m_height
  • CWindowDistance
    • m_x
    • m_y
  • CWindowLine
    • m_start
    • m_end
  • CWindowRect
    • m_top
    • m_left
    • m_right
    • m_bottom
  • sm_string
    • m_buffer
    • m_length
  • mm_string
    • m_buffer
    • m_length

Data Block 7

Actual data for Collection “Audit Trail”. See Data Block 6 for details on possible types of data.

Data Block 8

Defines the data format for Collection “Scan Header”.

Field Types: 16, 100, 101, 102

Possible Data Items and their Regions:

  • SCN
    • filevers
    • creation_date
    • last_use_date
    • user_id
    • prog_name
    • scanner
    • old_description
    • old_comment
    • desc
    • pH_orient
    • Mr_orient
    • nxpix
    • nypix
    • data_fmt
    • bytes_per_pix
    • endian
    • max_OD
    • pix_at_max_OD
    • img_size_x
    • img_size_y
    • min_pix
    • max_pix
    • mean_pix
    • data_ceiling
    • data_floor
    • cal
    • formula
    • imgstate
    • qinf
    • params
    • history
    • color
    • light_mode
    • size_mode
    • norm_pix
    • bkgd_pix
    • faint_loc
    • small_loc
    • large_box
    • bkgd_box
    • dtct_parm_name
    • m_id32
    • m_scnId
    • m_imagePK
  • ScnCalibInfo
    • calfmt
    • dettyp
    • isotop
    • gel_run_date
    • cnts_loaded
    • xpo_start_date
    • xpo_length
  • ScnFormula
    • type
    • units
    • c_pro
    • c_exp
  • ScnImgloc
    • x
    • y
  • ScnImgbox
    • first
    • last
  • ScnImgState
    • mincon
    • maxcon
    • in
    • out
    • low_frac
    • high_frac
    • state
    • gamma
    • aspect
  • ScnQtyInfo
    • qty_range
    • qty_units
    • blackIsZero
    • scanner_maxpix
    • scanner_units
    • scanner_bias
    • scanner_maxqty
    • calstep_count
    • calstep_raw
    • calstep_qty
    • calstep_qty_offset
    • gray_response_data
    • gray_response_len
    • gray_response_factor
  • ScnCrdloc
    • x
    • y
  • ScnCrdres
    • x
    • y
  • ScnCrdbox
    • first
    • last
  • ScnParams
    • resolution
    • scan_area
    • exposure_time
    • ref_bkg_time
    • gain_setting
    • light_mode
    • color
    • intf_type
    • size_mode
    • imaging_mode
    • filter_name1
    • filter_name2
    • filter_name3
    • filter_name4
    • filter_name5
    • filter_id1
    • filter_id2
    • filter_id3
    • filter_id4
    • filter_id5
    • laser_name1
    • laser_name2
    • laser_name3
    • laser_name4
    • laser_name5
    • laser_id1
    • laser_id2
    • laser_id3
    • laser_id4
    • laser_id5
    • pmt_voltage
    • dark_type
    • live_count
    • app_name
    • flat_field
  • GrayResponseData
    • GR_Data

Data Block 9

Actual data for Collection “Scan Header”. See Data Block 8 for details on possible types of data.

Data Block 10

Only image data, no fields

Image data in this block is only pixel data, organized starting from bottom-left of image to upper-right. The first bytes of this data define the pixels of the bottom row, from left to right. The next bytes are the second-to-bottom row from left to right, etc.

All known images are little-endian, 16-bit grayscale. Although the metadata may define another format. (See e.g. ‘Scan Header’ -> ‘SCN’ -> {‘endian’, ‘bytes_per_pix’, ‘data_fmt’ })