List of Data Blocks¶
Data Block 0¶
Defines the data format for Collection “Overlay Header”.
Field Types: 16, 100, 101, 102
Possible Data Items and their Regions:
- OverlaySave
- eType
- color
- where
- parentIndex
- start
- end
- startArrow
- endArrow
- rotationAngle
- orientation
- runs
- alignment
- bkgColor
- bTransparentBkg
- volumeDataPtr
- lassoPtr
- OverImgloc
- x
- y
- OverImgbox
- first
- last
- OverlaySaveArray
- array
- avail
- used
- regressionType
- OverTextRun
- string
- font
- fontFace
- fontSize
- color
- scriptStyle
- isBold
- isItalic
- isUnderlined
- OverTextRunArray
- array
- avail
- used
- OverVolumeData
- sumTotal
- sumBorders
- numPixels
- numPixelsBorders
- minPixelValue
- maxPixelValue
- stdDeviation
- concentration
- type
- hasUserLabel
- string
- overlaySavePtr
- OverLasso
- start
- bounds
- nsteps
- swused
- swavail
- steps
- integden
- pixcnt
- maxpix
- minpix
Data Block 1¶
Actual data for Collection “Overlay Header”. See Data Block 0 for details on possible types of data.
Data Block 2¶
Defines the data format for Collection “Q1 Description”.
Field Types: 16, 100, 101, 102
Possible Data Items and their Regions:
- Gel
- file_ver
- stripe
- notes
- nt_used
- nt_avail
- stdname
- stdunits
- stdtype
- blotrows
- blotcols
- smplwidth
- bkgden
- bkgtype
- calcflags
- nbacklog
- backlog
- tdisp_md
- lbkg_md
- lbkg_disk
- lbkg_window
- sensitivity
- min_peak
- noise_filter
- shoulder_sens
- size_scale
- normalize
- use_bandlimit
- shadow
- lbkg_flags
- bandlimit
- tolerance
- match_flags
- qcused
- qcavail
- calcurves
- qtyunits
- vntr_ambig
- flank
- repeat
- vntr_flags
- sim_flags
- sim_tolerance
- sim_required
- asl_used
- asl_avail
- as_links
- allele_set_code
- db_name
- db_path
- db_filename
- db_id
- mod_time
- taglist
- db_gelnum
- db_unit
- mobilmap
- db_update
- db_type
- adb_gelnum
- adb_unit
- adb_taglist
- flags
- bstyle
- difdsp
- lanes
- lnused
- lnavail
- nxties
- nyties
- nties
- ties
- Stripe
- dens
- denused
- denavail
- bkgbox
- minimum
- average
- maximum
- Lane
- name
- nyties
- crossings
- segtrace
- segused
- segavail
- bands
- bandused
- bandavail
- gpk
- gaussused
- gaussavail
- dentrace
- stdlanenum
- right_stdlanenum
- right_frac
- smplwidth
- lanenum
- flags
- calcflags
- sumden
- sumd_bands
- lbkg_disk
- lbkg_window
- lbkg_flags
- dtparm
- db_sample
- db_band_set
- db_standard
- dmt_used
- dmt_avail
- db_mobil
- db_bset_flags
- adb_band_set
- adb_sample
- lbkg_md
- Lane Pointer
- lane pointer
- Trace
- dvused
- dvavail
- dvals
- srcstrace
- navg
- min
- max
- avg
- bkdvals
- gaussdvused
- gaussdvavail
- gaussdvals
- Tdiag
- diag
- xaxis
- yaxis
- data
- srctrace
- dsttrace
- lanenum
- datawidth
- firstden
- max
- Band
- name
- sumden
- rf
- stdval
- quality
- norm_den
- calnum
- qty
- this
- first
- peak
- last
- maxpix
- minpix
- lasso
- db_btp_code
- db_btp_flags
- adb_btp_code
- adb_btp_flags
- stdsource
- flags
- qtysource
- Band Pointer
- band pointer
- Lasso
- start
- bounds
- nsteps
- swused
- swavail
- steps
- integden
- pixcnt
- maxpix
- minpix
- Band Link
- lanenum
- Bandnum
- Imgloc
- x
- y
- Imgbox
- first
- last
- Band Pointer
- unowned band pointer
- Calcurve
- name
- desc
- from
- cbused
- cbavail
- calbands
- ninterp
- intps
- slope
- intercept
- corr_coef
- calnum
- mcode
- model
- extrapolate
- status
- type
- named
- Calcurve Pointer
- calcurve pointer
- Calband
- band
- measure
- qty
- reldev
- dilution
- dilution_txt
- qtysource
- relstat
- Calintp
- measure
- qty
- Crosstie
- left
- ax
- Crdloc
- x
- y
- Stretcloc
- a
- r
- MobilTie
- rf
- mobility
- bst_idx
- btp_code
- AlleleSetLink
- name
- id_safety
- allele_set
- als_item
- UserDetect
- sensitivity
- min_peak
- noise_filter
- shoulder_sens
- size_scale
- normalize
- use_bandlimit
- shadow
- bandlimit
- BackLog
- type
- minden
- maxden
- Note
- head
- tail
- text_start
- text
- flags
- tag
- pr_code
- vl_code
- taglist
- used
- avail
- tags
- StandardTie
- std
- mobility
- MobilMap
- lanenum
- used
- stdties
- DifDsp Layout
- mode
- ratio
- differ
- GaussPeak
- center
- sigma
- height
- gauerr
- lolim
- hilim
- GaussPeak Pointer
- gspk pointer
Data Block 3¶
Actual data for Collection “Q1 Description”. See Data Block 2 for details on possible types of data.
Data Block 4¶
Defines the data format for Collection “DDB Description”.
Field Types: 16, 100, 101, 102
Possible Data Items and their Regions:
- tag
- pr_code
- vl_code
- taglist
- used
- avail
- tags
- tag_value
- references
- decode
- tagdef
- prompt
- references
- used
- avail
- values
- tagdef_list
- used
- avail
- tagdefs
- band
- quality
- std_value
- norm_den
- btp_code
- flags
- peak
- lane
- bands_used
- bands_avail
- bands
- sample_code
- bst_code
- flags
- dentrace
- dmt_used
- dmt_avail
- db_mobil
- gel
- path
- filename
- id
- name
- description
- cre_time
- mod_time
- update
- lanes_used
- lanes_avail
- lanes
- taglist
- mobilmap
- lanewidth
- detection
- unit
- gidx
- stdtype
- lbkg_md
- lbkg_disk
- lbkg_status
- layout
- gel pointer
- gel pointer
- sample
- name
- cre_time
- description
- taglist
- idx_used
- idx_avail
- indices
- flags
- sample pointer
- sample pointer
- band_type
- name
- btp_code
- index
- gidx
- lanenum
- low_std
- ideal_std
- high_std
- low_sf
- ideal_sf
- high_sf
- band set
- name
- cre_time
- mod_time
- idx_used
- idx_avail
- index
- comment
- id
- tolerance
- bst_idx
- bt_used
- bt_avail
- bt_valid
- band_types
- taglist
- tagdefs
- unit
- norm_btp_code
- gidx
- lanenum
- method
- modified
- code_style
- display_names
- report_names
- type
- unit_change
- model_vers
- band set pointer
- band set pointer
- base
- name
- description
- cre_time
- mod_time
- id
- pathname
- gels_used
- gels_avail
- gels
- gel_sorting
- gel_sort_tag
- gel_count
- gtpl_used
- gtpl_avail
- gtpl_count
- gel_templates
- smpl_used
- smpl_avail
- samples
- sample_sorting
- sample_count
- bst_used
- bst_avail
- band_sets
- bst_sorting
- bst_count
- srch_used
- srch_avail
- srch_count
- searches
- tagdef_list
- layouts
- units_used
- units_avail
- units
- pop_used
- pop_avail
- pop_count
- pop_links
- seg_map
- db_type
- layouts
- sum
- gel_list
- sample_detail
- sample_list
- gel_detail
- bset
- srch
- odrep
- dbp
- difdsp
- detect
- gel_list_layout
- sel_name
- sel_date_from
- sel_date_to
- sel_tag1
- sel_tag2
- sort_by
- lst_pr_code
- dbpos
- sample_detail_layout
- tagdefs
- dbpos
- sample_list_layout
- sel_tagdef1
- sel_tagdef2
- lst_tagdef1
- lst_tagdef2
- sort_by
- dbpos
- geldet_layout
- gel_tagdef1
- gel_tagdef2
- sample_tagdef1
- sample_tagdef2
- sort_by
- flags
- dbpos
- bset_layout
- unit
- tagdefs
- default_bset
- lg_dbpos
- sm_dbpos
- unit
- longname
- shortname
- unitname
- interp
- order
- flags
- unit pointer
- unit pointer
- reference lane
- gidx
- lanenum
- bst_idx
- search
- name
- smplname
- date_from
- date_to
- taglist
- tagdefs
- match
- ref_smpl
- match_percent
- nlanes
- ref_lanes
- srchnum
- search_by
- compare
- sim_method
- weighting
- edited
- include
- useGaussModelsIfPresent
- search pointer
- search pointer
- search layout
- match_percent
- srchnum
- tagdefs
- sim_method
- include
- weighting
- dbpos
- lane index
- gidx
- lanenum
- bst_idx
- pop link
- name
- plidx
- dir_block
- data_block
- pop link pointer
- poplink pointer
- segment map
- first
- nsegs
- segs
- dbp_pr_coldata_fields
- type
- value
- pr layout
- ref_lnum
- cols_used
- coldata
- flags
- font
- sum layout
- style
- lg_dbpos
- sm_dbpos
- imgloc
- x
- y
- imgres
- x
- y
- ddb position
- loc
- size
- flags
- dbp ptree layout
- dp_pos
- method
- dbp pca layout
- dp_pos
- dbp popfrm layout
- dp_pos
- dbp layouts
- popfrm
- pr
- ptree
- pca
- irp
- irp layout
- cols_used
- coldata
- ref
- order
- active
- style
- pg_layout
- show_btypes
- ruler
- ref_lnum
- odrep layout
- od_types
- mobilmap
- lanenum
- used
- stdties
- standardtie
- std
- mobility
- DifDsp Layout
- mode
- ratio
- differ
- detect layout
- userdet
- screenloc
- lane_width
- manual
- style
- valid
- userdetect
- sensitivity
- min_peak
- noise_filter
- shoulder_sens
- size_scale
- normalize
- use_bandlimit
- shadow
- bandlimit
- dentrace
- dvused
- dvavail
- dvals
- srctrace
- navg
- min
- max
- avg
- bkdvals
- gaussdvused
- gaussdvavail
- gaussdvals
- gaussmax
- gaussmin
- imgbox
- first
- last
- db_mobil.
- rf
- mobility
- bst_idx
- btp_code
Data Block 5¶
Actual data for Collection “DDB Description”. See Data Block 4 for details on possible types of data.
Data Block 6¶
Defines the data format for Collection “Audit Trail”.
Field Types: 16, 100, 101, 102
Possible Data Items and their Regions:
- AuditTrail
- m_entries
- m_userPool
- m_descPool
- m_appPool
- AuditTrailEntry
- m_time
- m_user
- m_description
- m_details
- m_detailX1
- m_detailY1
- m_detailX2
- m_detailY2
- m_version
- m_comment
- m_filter
- m_locked
- AuditTrailEntryPtr
- AuditTrailEntryPtr
- AuditTrailEntryPtrVector
- m_mmvectorList
- m_mmvectorUsed
- m_mmvectorAvail
- AuditTrailStringPool
- m_pool
- AuditTrailStringVector
- m_mmvectorList
- m_mmvectorUsed
- m_mmvectorAvail
- Imgloc
- x
- y
- Imgres
- x
- y
- Imgbox
- first
- last
- Crdloc
- x
- y
- Crdres
- x
- y
- Crdbox
- first
- last
- Crdscale
- x
- y
- ImgState
- mincon
- maxcon
- in
- out
- low_frac
- high_frac
- state
- gamma
- aspect
- Savemap
- center
- scale
- CRealPoint
- m_x
- m_y
- CRealSize
- m_width
- m_height
- CRealDistance
- m_x
- m_y
- CRealLine
- m_start
- m_end
- CRealRect
- m_top
- m_left
- m_right
- m_bottom
- CImagePoint
- m_x
- m_y
- CImageSize
- m_width
- m_height
- CImageDistance
- m_x
- m_y
- CImageLine
- m_start
- m_end
- CImageRect
- m_top
- m_left
- m_right
- m_bottom
- CWindowPoint
- m_x
- m_y
- CWindowSize
- m_width
- m_height
- CWindowDistance
- m_x
- m_y
- CWindowLine
- m_start
- m_end
- CWindowRect
- m_top
- m_left
- m_right
- m_bottom
- sm_string
- m_buffer
- m_length
- mm_string
- m_buffer
- m_length
Data Block 7¶
Actual data for Collection “Audit Trail”. See Data Block 6 for details on possible types of data.
Data Block 8¶
Defines the data format for Collection “Scan Header”.
Field Types: 16, 100, 101, 102
Possible Data Items and their Regions:
- SCN
- filevers
- creation_date
- last_use_date
- user_id
- prog_name
- scanner
- old_description
- old_comment
- desc
- pH_orient
- Mr_orient
- nxpix
- nypix
- data_fmt
- bytes_per_pix
- endian
- max_OD
- pix_at_max_OD
- img_size_x
- img_size_y
- min_pix
- max_pix
- mean_pix
- data_ceiling
- data_floor
- cal
- formula
- imgstate
- qinf
- params
- history
- color
- light_mode
- size_mode
- norm_pix
- bkgd_pix
- faint_loc
- small_loc
- large_box
- bkgd_box
- dtct_parm_name
- m_id32
- m_scnId
- m_imagePK
- ScnCalibInfo
- calfmt
- dettyp
- isotop
- gel_run_date
- cnts_loaded
- xpo_start_date
- xpo_length
- ScnFormula
- type
- units
- c_pro
- c_exp
- ScnImgloc
- x
- y
- ScnImgbox
- first
- last
- ScnImgState
- mincon
- maxcon
- in
- out
- low_frac
- high_frac
- state
- gamma
- aspect
- ScnQtyInfo
- qty_range
- qty_units
- blackIsZero
- scanner_maxpix
- scanner_units
- scanner_bias
- scanner_maxqty
- calstep_count
- calstep_raw
- calstep_qty
- calstep_qty_offset
- gray_response_data
- gray_response_len
- gray_response_factor
- ScnCrdloc
- x
- y
- ScnCrdres
- x
- y
- ScnCrdbox
- first
- last
- ScnParams
- resolution
- scan_area
- exposure_time
- ref_bkg_time
- gain_setting
- light_mode
- color
- intf_type
- size_mode
- imaging_mode
- filter_name1
- filter_name2
- filter_name3
- filter_name4
- filter_name5
- filter_id1
- filter_id2
- filter_id3
- filter_id4
- filter_id5
- laser_name1
- laser_name2
- laser_name3
- laser_name4
- laser_name5
- laser_id1
- laser_id2
- laser_id3
- laser_id4
- laser_id5
- pmt_voltage
- dark_type
- live_count
- app_name
- flat_field
- GrayResponseData
- GR_Data
Data Block 9¶
Actual data for Collection “Scan Header”. See Data Block 8 for details on possible types of data.
Data Block 10¶
Only image data, no fields
Image data in this block is only pixel data, organized starting from bottom-left of image to upper-right. The first bytes of this data define the pixels of the bottom row, from left to right. The next bytes are the second-to-bottom row from left to right, etc.
All known images are little-endian, 16-bit grayscale. Although the metadata may define another format. (See e.g. ‘Scan Header’ -> ‘SCN’ -> {‘endian’, ‘bytes_per_pix’, ‘data_fmt’ })